PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g063100.4
Common NameMTR_4g063100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 177aa    MW: 20346.1 Da    PI: 4.3247
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g063100.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-106302348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                     +W++Iar+++ gRt++++k++w++++
  Medtr4g063100.4  6 RWSRIARKLP-GRTDNEIKNYWRTHM 30
                     5*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.159134IPR017930Myb domain
SuperFamilySSF466891.01E-7535IPR009057Homeodomain-like
CDDcd001675.04E-7630No hitNo description
Gene3DG3DSA:1.10.10.608.9E-12631IPR009057Homeodomain-like
PfamPF002493.6E-7629IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MCDDCRWSRI ARKLPGRTDN EIKNYWRTHM RKKRAQEKKH ATPSISSSPD QSSSCQSSHF  60
SNSNHGVDSH ASNKESEEEN YQVQEIEQGY SMDDIWKDIA MSEDDINVLQ PDFDGTSEEN  120
SNNLSCPIMP STSSWDYSYL DPLWVMDEEE SKMLFPPIGD QYFSFYDQQG NTFLTG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111830.0leaf| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1392880.0BT139288.1 Medicago truncatula clone JCVI-FLMt-11A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606616.11e-131myb transcription factor
TrEMBLG7JTP61e-131G7JTP6_MEDTR; Myb transcription factor
STRINGGLYMA11G15180.64e-43(Glycine max)
STRINGGLYMA15G04620.12e-43(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.23e-25myb domain protein 48
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]